R alphasimr
Webb17 jan. 2024 · 'Armadillo' is a templated C++ linear algebra library (by Conrad Sanderson) that aims towards a good balance between speed and ease of use. Integer, floating point and complex numbers are supported, as well as a subset of trigonometric and statistics functions. Various matrix decompositions are provided through optional integration with … Webb11 aug. 2024 · 25 This paper introduces AlphaSimR, an R package for stochastic simulations of 26 plant and animal breeding programs. Stochastic simulation is a powerful tool for design 27 and optimization of breeding programs, because it provides a fast, inexpensive method 28 for testing alternative breeding program designs.
R alphasimr
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WebbThe AlphaSimR website is currently under development and has only been made available for testing at this time. This page will change when the website is ready for widespread use. Publication. Gaynor, R. Chris, Gregor Gorjanc, and John M. Hickey. 2024.
Webb20 okt. 2024 · These functions allow for constructing simulations of highly complex plant and animal breeding programs via scripting in the R software environment. Such simulations can be used to evaluate overall breeding program performance and conduct research into breeding program design, such as implementation of genomic selection. WebbThe development version of AlphaSimR (potentially unstable) can be accessed from the devel branch on GitHub. To install use: devtools::install_github …
Webb14 jan. 2024 · To make this task easier, AlphaSimR has been designed as a package for the R software environment. AlphaSimR provides its users with functions that match common operations undertaken in a breeding program, such as crossing and selection, so that users can build simulations by writing short scripts. WebbThe text was updated successfully, but these errors were encountered:
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AlphaSimR: Breeding Program Simulations. The successor to the 'AlphaSim' software for breeding program simulation [Faux et al. (2016) ]. Used for stochastic simulations of breeding programs to the level of DNA sequence for every individual. green mountain coffee brewersWebb20 okt. 2024 · AlphaSimR: Breeding Program Simulations. The successor to the 'AlphaSim' software for breeding program simulation [Faux et al. (2016) … green mountain coffee brandsWebbDownload AlphaSimR is available on CRAN. To install use: install.packages ('AlphaSimR') The development version of AlphaSimR (potentially unstable) can be accessed from the … green mountain coffee beans retailersWebb15 dec. 2024 · ../check/ 14-Dec-2024 02:22 - stats/ 14-Dec-2024 02:33 - A3_1.0.0.zip 14-Dec-2024 02:22 90392 AATtools_0.0.1.zip 14-Dec-2024 02:22 227904 ABACUS_1.0.0.zip 14-Dec-2024 02:22 134212 ABC.RAP_0.9.0.zip 14-Dec-2024 02:22 4808804 ABCanalysis_1.2.1.zip 14-Dec ... flying to and from mexicoWebbmakeCross {AlphaSimR} R Documentation: Make designed crosses Description. Makes crosses within a population using a user supplied crossing plan. Usage makeCross(pop, crossPlan, nProgeny = 1, simParam = NULL) Arguments. pop: an … green mountain coffee blueberryWebb9 feb. 2024 · Data were simulated using the AlphaSimR package (Gaynor et al., 2024) in R. The genome consisted of three chromosomes each 1 CM in length with 11,100 evenly … flying to apple valleyWebbDetails on how ‘AlphaSimR’ simulates additive and non-additive biological effects can be found in the “Traits in AlphaSimR” vignette. It should be noted, however, that a simple additive genetic model will be sufficient to answer most experimental questions and may be preferred to more complex models, especially if data to tune the simulation model is … flying to ann arbor